The Greenleaf Lab
Developing methods and analyses for modeling the physical genome.
Department of genetics
stanford university school of medicine
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Understanding the Physical Genome
Our lab focuses on developing methods to probe both the structure and function of molecules encoded by the genome, as well as the physical compaction and folding of the genome itself. Our efforts largely focus on bringing the power of high-throughput sequencing technologies to bear on fundamental biological questions by linking sequence, structure, function, and physical models of cellular machinery.
High-throughput Biophysics & Molecular Evolution
We are interested in understanding the biophysical basis and evolutionary consequences of sequence-function relationships in biological molecules and their interactions. Toward this goal, we develop ultra-high-throughput methods to quantitatively assay sequence-space in bulk and single-molecule experiments in and out of cells.
DNA Accessibility & Chromatin Structure
We seek to understand the hierarchical folding of genomic DNA into regulated structures, the most basic and important of which is the nucleosome. With this objective in mind, we have developed methods that assay open chromatin, nucleosome positions, and transcription factor binding genome-wide in small populations of cells undergoing dynamic processes such as differentiation or stochastic state switching.
Sound Interesting?
We are actively recruiting students and postdoctoral fellows to work on these and other projects in the lab.
